Popp Group

Chair of Physical Chemistry II (Material and Biophotonic)

The research of the working group focuses mainly on the development and application of innovative Raman-based methods to answer biomedical questions. Raman spectroscopy and the various Raman-based technologies such as Raman microscopy, SERS or CARS are powerful tools for addressing a broad range of bioanalytical and biomedical problems such as the rapid identification of pathogens, the sensitive monitoring of low-concentration molecules (e.g. drugs or metabolites) or the objective clinical evaluation of cell and tissue samples for early cancer detection.

Contact

Jürgen Popp, Univ.-Prof. Dr
Chair of Physical Chemistry II
Prof. Dr. Jürgen Popp
Image: Sven Doering / Agentur Focus
Helmholtzweg 4
07743 Jena Google Maps site planExternal link

Staff

  1. Agyemang, Michael Freduah Chair of Physical Chemistry II (Material- and Biophotonics)
  2. Cui, Dongyu Chair of Physical Chemistry II (Material- and Biophotonics)
  3. Edwards, Akuila Lotesha Jamela Lashern Chair of Physical Chemistry II (Material- and Biophotonics)
  4. Elmashtoly, Samir Fathy Abdelmonem, Dr Chair of Physical Chemistry II (Material- and Biophotonics)

    Room 204
    Philosophenweg 7
    07743 Jena

  5. Enghardt, Marie-Luise Chair of Physical Chemistry II (Material- and Biophotonics)
  6. Farnesi, Edoardo Chair of Physical Chemistry II (Material- and Biophotonics)

    Room 187
    Albert-Einstein-Straße 9
    07745 Jena

  7. Frempong, Sandra Baaba Chair of Physical Chemistry II (Material- and Biophotonics)
  8. Girnus, Sophie Chair of Physical Chemistry II (Material- and Biophotonics)
  9. Jana, Sankar Chair of Physical Chemistry II (Material- and Biophotonics)

    Room E007
    Helmholtzweg 4
    07743 Jena

  10. Luo, Ruihao Chair of Physical Chemistry II (Material- and Biophotonics)

    JenTower, Room 15S05
    Leutragraben 1
    07743 Jena

  11. Marasinghe Arachchige, Lakruvini Perera Chair of Physical Chemistry II (Material- and Biophotonics)
  12. Motganhalli Ravikumar, Ramya Chair of Physical Chemistry II (Material- and Biophotonics)

    Room E006
    Helmholtzweg 4
    07743 Jena

  13. Naumann, Frida Chair of Physical Chemistry II (Material- and Biophotonics)
  14. Pistiki, Aikaterini Chair of Physical Chemistry II (Material- and Biophotonics)
  15. Popp, Jürgen, Univ.-Prof. Dr Chair of Physical Chemistry II (Material- and Biophotonics)
    Prof. Dr. Jürgen Popp
    Image: Sven Doering / Agentur Focus
  16. Ramoji, Anuradha, Dr Chair of Physical Chemistry II (Material- and Biophotonics)

    Room E006
    Helmholtzweg 4
    07743 Jena

    Dr. Anuradha Ramoji
    Image: Dr. Anuradha Ramoji
  17. Rösch, Petra, Dr Chair of Physical Chemistry II (Material- and Biophotonics)
    Dr. Petra Rösch
    Image: Dr. Petra Rösch
  18. Salbreiter, Markus Chair of Physical Chemistry II (Material- and Biophotonics)
  19. Schmitt, Michael, apl. Prof. Dr Chair of Physical Chemistry II (Material- and Biophotonics)
    Prof. Dr. Michael Schmitt
    Image: Prof. Dr. Michael Schmitt
  20. Silge, Anja, Dr Chair of Physical Chemistry II (Material- and Biophotonics)

    Room 331
    Albert-Einstein-Straße 9
    07745 Jena

    Dr. Anja Silge
    Image: Dr. Anja Silge
  21. Spoerer, Jana Chair of Physical Chemistry II (Material- and Biophotonics)

    Abbe Center of Photonics
    Albert-Einstein-Straße 6
    07745 Jena

  22. Tarcea, Nicolae, Dr Chair of Physical Chemistry II (Material- and Biophotonics)

    Room E007
    Helmholtzweg 4
    07743 Jena

    Dr. Nicolae Tarcea
    Image: Dr. Nicolae Tarcea
  23. Wagenhaus, Annette Chair of Physical Chemistry II (Material- and Biophotonics)

    Room E010
    Helmholtzweg 4
    07743 Jena

  24. Yeo, Tze Ching Chair of Physical Chemistry II (Material- and Biophotonics)

183 Publikationen filtern

Die Publikationen filtern
  1. Photonic Diagnosis, Monitoring, Prevention, and Treatment of Infections and Inflammatory Diseases 2025

    Year of publication
    University Bibliography Jena:
    fsu_mods_00026043External link
  2. Multiplex electrochemical aptasensor for the simultaneous detection of linomycin and neomycin antibiotics

    Year of publicationPublished in:Talanta: the international journal of pure and applied analytical chemistry W. Al borhani, A. Rhouati, D. Cialla-May, J. Popp, M. Zourob
  3. A multiplexing immunosensing platform for the simultaneous detection of snake and scorpion venoms: Towards a better management of antidote administration

    Year of publicationPublished in:Talanta: the international journal of pure and applied analytical chemistry A. AlMusharraf, A. Rhouati, D. Cialla-May, J. Popp, M. Zourob
  4. Development of a label-free, functional, molecular and structural imaging system combining optical coherence tomography and Raman spectroscopy for in vivo measurement of rat retina

    Year of publicationPublished in:Biomedical Optics Express R. Sentosa, M. Salas, C. Merkle, M. Eibl, W. de Jong, A. Amelink, M. Schmitt, I. Krestnikov, V. Shynkar, M. Kempe, T. Schmoll, B. Baumann, M. Andreana, A. Unterhuber, J. Popp, W. Drexler, R. Leitgeb
    In vivo access to molecular information of retinal tissue is considered to play a critical role in enabling early diagnosis of ophthalmic and neurodegenerative diseases. The current gold standard of retina imaging, optical coherence tomography and angiography provides only the retinal morphology and blood perfusion, missing the full spectrum of molecular information. Raman spectroscopy addresses this gap while keeping the investigation non-invasive and label-free. Although previous studies have demonstrated the huge diagnostic potential of combining both modalities for in vivo biological tissue measurement, some have either employed unsafe optical power levels for in vivo retinal measurements or presented results that were negative or contradictory. In this study, we have developed an eye-safe multimodal in vivo label-free imaging system and demonstrate the potential of this device by investigating the retina of a living albino rat. The acquired Raman spectra showed relevant Raman bands in comparison with the previous ex vivo studies. Using this multimodal imaging system for non-invasive retina measurements of transgenic rodents holds the potential to advance the understanding of the pathophysiology of both ophthalmic and neurodegenerative diseases.
    University Bibliography Jena:
    fsu_mods_00019976External link
  5. Surface-Enhanced Raman Spectroscopy for Biomedical Applications: Recent Advances and Future Challenges

    Year of publicationPublished in:ACS Applied Materials and Interfaces L. Lin, R. Alvarez-Puebla, L. Liz-Marzán, M. Trau, J. Wang, L. Fabris, X. Wang, G. Liu, S. Xu, X. Han, L. Yang, A. Shen, S. Yang, Y. Xu, C. Li, J. Huang, S. Liu, J. Huang, I. Srivastava, M. Li, L. Tian, L. Nguyen, X. Bi, D. Cialla-May, P. Matousek, N. Stone, R. Carney, W. Ji, W. Song, Z. Chen, I. Phang, M. Henriksen-Lacey, H. Chen, Z. Wu, H. Guo, H. Ma, G. Ustinov, S. Luo, S. Mosca, B. Gardner, Y. Long, J. Popp, B. Ren, S. Nie, B. Zhao, X. Ling, J. Ye
  6. Raman spectroscopy as a comprehensive tool for profiling endospore-forming bacteria

    Year of publicationPublished in:The analyst: the analytical journal of the Royal Society of Chemistry M. Salbreiter, A. Wagenhaus, P. Rösch, J. Popp
    Accurate and reliable bacterial identification at the genus and species levels is essential for effective clinical diagnostics. Pathogens such as Clostridium perfringens, Bacillus cereus, Clostridioides difficile, and Paraclostridium sordellii pose significant challenges due to their unique cultivation requirements and developmental traits. Building on our previous work demonstrating the differentiation of vegetative Clostridium cells from non-Clostridium genera, we now aim to extend this approach to distinguish endospores of the same species. Raman spectroscopy was utilized to develop a comprehensive library of endospore spectra, encompassing both pathogenic and non-pathogenic species. This extensive dataset forms the foundation for advanced analytical capabilities. Chemometric analysis of single-endospore Raman spectra revealed significant discriminatory power across multiple hierarchical levels, facilitating the distinction between vegetative cells and endospores. Furthermore, this method enabled precise genus- and species-level classification of endospores, underscoring its potential for high-resolution bacterial endospore identification. These results highlight the versatility and efficacy of Raman spectroscopy in addressing the challenges associated with the identification of bacterial endospores in diverse clinical and environmental contexts. These findings present the first comprehensive library of endospore Raman spectra, demonstrating that Raman spectroscopy combined with chemometric analysis is a robust and reliable method for differentiating endospores of Clostridium species from those of Bacillus, Clostridioides, and Paraclostridium. This approach holds significant promise as a precise diagnostic tool for bacterial endospore identification in clinical settings.
    University Bibliography Jena:
    fsu_mods_00024132External link
  7. Impact of clinical preparation steps and use of sex-specific reference for accurate antibiotic monitoring in body fluids

    Year of publicationPublished in:Communications Medicine C. Domes, L. Graul, T. Frosch, J. Popp, S. Hagel, M. Pletz, T. Frosch
    Background: Effective antibiotic therapy in critically ill patients requires precise dosing tailored to individual conditions. However, physiological changes in these patients can complicate drug exposure prediction, leading to treatment failure or toxicity. Therapeutic drug monitoring (TDM) is crucial in optimizing antibiotic therapy, with Raman spectroscopy emerging as a promising method due to its speed and sensitivity. Methods: The utility of resonance Raman spectroscopy in analyzing clinical urine samples was investigated, specifically focusing on piperacillin concentrations. Samples subjected to various preparation techniques, including freezing, centrifugation, and filtration, were analyzed using deep UV resonance Raman spectroscopy. Data analysis involved preprocessing and chemometric modeling to assess concentration changes and the influence of sample matrix. Results: Sample preparation steps induce concentration changes in piperacillin, with freezing having the highest impact. Chemometric modeling reveals that freezing, filtration, and centrifugation, especially when combined, reduce drug concentration. Furthermore, the choice of urine reference for quantification impacts results, with sex-specific urine pools showing better accuracy compared to mixed pools. Conclusions: Resonance Raman spectroscopy effectively quantifies piperacillin concentrations in urine. Freezing, centrifugation, and filtration during sample preparation influence drug concentration. Using sex-specific urine pools as references yields more accurate quantification results. These findings underscore the importance of considering sample processing effects and reference selection in TDM studies, offering insights for optimizing antibiotic dosing in critically ill patients. Further validation on a larger scale is warranted to confirm these observations.
    University Bibliography Jena:
    fsu_mods_00024150External link
  8. Correlated micro-spectroscopic labelling and analysis of leukocytes

    Year of publicationPublished in:Photonic Diagnosis, Monitoring, Prevention, and Treatment of Infections and Inflammatory Diseases 2025 S. Raghunathan, S. Piehler, J. Kunze, M. Kiehntopf, J. Popp, C. Krafft
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